bio-splicing-pipeline
github.com/BioTender-max/awesome-bio-agent-skills
Scanned Thu, 28 May 2026 15:24:45 GMT
Scan ID crawl-haj7x3jljymng0axosbaydje · 2ms
B
SCORE 75 / 100
Verdict: Safe to install

3 medium findings.

This skill spawns subprocesses outside its declared capabilities plus 2 other issues listed below.

0 critical0 high3 medium9 rules passed

Why grade B?

score · 75 / 100

The current grade reflects 3 medium findings (3+ MEDs → B).

0 CRIT0 HIGH3 MED0 LOW
To reach a higher grade
  • A
    Reach Atarget score 95

    Resolve 1 of 3 MED (cap is 2).

Thresholds are documented at /docs/grading. Source-of-truth is the grade() function in @skillox/scanner.

Findings · ordered by severity

med
Arbitrary subprocess execution detected
The skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.
rule: subprocess-executionline: 90CWE-78
88 Plateau indicates sufficient depth for splicing analysis.
89 '''
90 subprocess.run([spawns a subprocess outside declared capabilities
91 'junction_saturation.py',
92 '-i', bam_file,
med
Arbitrary subprocess execution detected
The skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.
rule: subprocess-executionline: 194CWE-78
192 gene = event['geneSymbol']
193
194 subprocess.run([spawns a subprocess outside declared capabilities
195 'ggsashimi.py',
196 '-b', grouping_file,
med
No capability manifest declared
The skill ships without a `manifest.yaml` or `capabilities` block in its frontmatter. Without a manifest, the runtime cannot enforce what this skill is permitted to do.
rule: no-manifest
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