bio-splicing-pipeline
github.com/BioTender-max/awesome-bio-agent-skills
Scanned Thu, 28 May 2026 15:24:45 GMT
Scan ID crawl-haj7x3jljymng0axosbaydje · 2ms
B
SCORE 75 / 100
Verdict: Safe to install
3 medium findings.
This skill spawns subprocesses outside its declared capabilities plus 2 other issues listed below.
0 critical0 high3 medium9 rules passed
Why grade B?
score · 75 / 100The current grade reflects 3 medium findings (3+ MEDs → B).
0 CRIT0 HIGH3 MED0 LOW
To reach a higher grade
- AReach Atarget score 95
Resolve 1 of 3 MED (cap is 2).
Thresholds are documented at /docs/grading. Source-of-truth is the grade() function in @skillox/scanner.
Findings · ordered by severity
medArbitrary subprocess execution detectedThe skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.▾
Arbitrary subprocess execution detected
The skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.
88 Plateau indicates sufficient depth for splicing analysis.
89 '''
90 subprocess.run([← spawns a subprocess outside declared capabilities
91 'junction_saturation.py',
92 '-i', bam_file,
medArbitrary subprocess execution detectedThe skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.▾
Arbitrary subprocess execution detected
The skill spawns subprocesses. Without a capability manifest declaring this, the skill could execute arbitrary commands.
192 gene = event['geneSymbol']
193
194 subprocess.run([← spawns a subprocess outside declared capabilities
195 'ggsashimi.py',
196 '-b', grouping_file,
medNo capability manifest declaredThe skill ships without a `manifest.yaml` or `capabilities` block in its frontmatter. Without a manifest, the runtime cannot enforce what this skill is permitted to do.rule: no-manifest▾
No capability manifest declared
The skill ships without a `manifest.yaml` or `capabilities` block in its frontmatter. Without a manifest, the runtime cannot enforce what this skill is permitted to do.
rule:
no-manifestskillox.io/r/crawl-haj7x3jljymng0axosbaydje